Publication details.


Author(s):A. Murray, J. Freudenstein, S. Gribaldo, R. Hatzenpichler, P. Hugenholtz, P. Kämpfer, K. Konstantinidis, C. Lane, R. Papke, D. Parks, R. Rossello-Mora, M. Stott, I. Sutcliffe, J. Thrash, S. Venter, W. Whitman, S. Acinas, R. Amann, K. Anantharaman, J. Armengaud, B. Baker, R. Barco, H. Bode, E. Boyd, C. Brady, P. Carini, P. Chain, D. Colman, K. DeAngelis, M. de los Rios, P. Estrada-de los Santos, C. Dunlap, J. Eisen, D. Emerson, T. Ettema, D. Eveillard, P. Girguis, U. Hentschel, J. Hollibaugh, L. Hug, W. Inskeep, E. Ivanova, H. Klenk, W. Li, K. Lloyd, F. Löffler, T. Makhalanyane, D. Moser, T. Nunoura, M. Palmer, V. Parro, C. Pedrós-Alió, A. Probst, T. Smits, A. Steen, E. Steenkamp, A. Spang, F. Stewart, J. Tiedje, P. Vandamme, M. Wagner, F. Wang, B. Hedlund, A. Reysenbach
Title:Roadmap for naming uncultivated Archaea and Bacteria
Journal:Nature Microbiology
JCR Impact Factor:17.745
Issue No.:8
Abstract:© 2020, The Author(s).The assembly of single-amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea and Bacteria, bringing with it a need to develop guidelines for nomenclature of uncultivated microorganisms. The International Code of Nomenclature of Prokaryotes (ICNP) only recognizes cultures as ‘type material’, thereby preventing the naming of uncultivated organisms. In this Consensus Statement, we propose two potential paths to solve this nomenclatural conundrum. One option is the adoption of previously proposed modifications to the ICNP to recognize DNA sequences as acceptable type material; the other option creates a nomenclatural code for uncultivated Archaea and Bacteria that could eventually be merged with the ICNP in the future. Regardless of the path taken, we believe that action is needed now within the scientific community to develop consistent rules for nomenclature of uncultivated taxa in order to provide clarity and stability, and to effectively communicate microbial diversity.

Related staff

  • Ramon Rosselló Móra
  • Related departments

  • Animal and Microbial Biodiversity
  • Related research groups

  • Environmental Microbiology